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HIST1H1C
Localization (UniProt annotation) Nucleus Chromosome Note=Mainly localizesin euchromatin Distribution goes in parallel with DNAconcentration Function (UniProt annotation) Histone H1 protein binds to linker DNA betweennucleosomes forming the macromolecular structure known as thechromatin fiber Histones H1 are necessary for the condensation ofnucleosome chains into higher-order structured fibers Acts alsoas a regulator of individual gene transcription through chromatinremodeling, nucleosome spacing and DNA methylation (Bysimilarity) Catalytic Activity (UniProt annotation) N/A Protein Sequence MSETAPAAPAAAPPAEKAPVKKKAAKKAGGTPRKASGPPVSELITKAVAASKERSGVSLAALKKALAAAGYDVEKNNSRI
KLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKK
PAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAAKPKVVKPKKAAPKKK
ELM Motif Motif Instance
Description Motif Regex NA NA NA NA
Pathway ID Pathway Name Pathway Description (KEGG) R-HSA-211227 Activation of DNA fragmentation factor. DNA fragmentation in response to apoptotic signals is achieved, in part, through the activity of apoptotic nucleases, termed DNA fragmentation factor (DFF) or caspase-activated DNase (CAD) (reviewed in Widlak and Garrard, 2005). In non-apoptotic cells, DFF is a nuclear heterodimer consisting of a 45 kD chaperone and inhibitor subunit (DFF45)/inhibitor of CAD (ICAD-L)] and a 40 kD nuclease subunit (DFF40/CAD)( Liu et al. 1997, 1998; Enari et al. 1998). During apoptosis, activated caspase-3 or -7 cleave DFF45/ICAD releasing active DFF40/CAD nuclease. The activity of DFF is tightly controlled at multiple stages. During translation, DFF45/ICAD, Hsp70, and Hsp40 proteins play a role in insuring the appropriate folding of DFF40 during translation(Sakahira and Nagata, 2002). The nuclease activity of DFF40 is enhanced by the chromosomal proteins histone H1, Topoisomerase II and HMGB1/2(Widlak et al., 2000). In addition, the inhibitors (DFF45/35; ICAD-S/L) are produced in stoichiometric excess (Widlak et al., 2003) R-HSA-2559584 Formation of Senescence-Associated Heterochromatin Foci (SAHF). The process of DNA damage/telomere stress induced senescence culminates in the formation of senescence associated heterochromatin foci (SAHF). These foci represent facultative heterochromatin that is formed in senescent cells. They contribute to the repression of proliferation promoting genes and play an important role in the permanent cell cycle exit that characterizes senescence (Narita et al. 2003 and 2006). SAHF appear as compacted, punctate DAPI stained foci of DNA. Each chromosome is condensed into a single SAH focus, with telomeric and centromeric chromatin located predominantly at its periphery (Funayama et al. 2006, Zhang et al. 2007).An evolutionarily conserved protein complex of HIRA, ASF1A, UBN1 and CABIN1 plays a crucial role in the SAHF formation. As cells approach senescence, HIRA, ASF1A, UBN1 and CABIN1 accumulate at the PML bodies (Zhang et al. 2005, Banumathy et al. 2009, Rai et al. 2011). PML bodies are punctate nuclear structures that contain PML protein and numerous other proteins and are proposed to be the sites of assembly of macromolecular regulatory complexes and protein modification (Fogal et al. 2000, Guo et al. 2000, Pearson et al. 2000). Recruitment of HIRA to PML bodies coincides with altered chromatin structure and deposition of macroH2A histone H2A variant onto chromatin. As cells become senescent, HIRA, ASF1A, UBN1 and CABIN1 relocate from PML bodies to SAHF. HIRA accumulation at PML bodies is RB1 and TP53 independent, but may require phosphorylation of HIRA serine S697 by GSK3B (Ye, Zerlanko, Kennedy et al. 2007). SAHF formation itself, however, requires functional RB1 and TP53 pathways (Ye, Zerlanko, Zhang et al. 2007).
SAHF contain H3K9Me mark, characteristic of trancriptionally silent chromatin, and HP1, marcoH2A histone H2A variant and HMGA proteins are also components of SAHF (Narita et al. 2006), besides the HIRA:ASF1A:UBN1:CABIN1 complex. A yet unidentified H3K9Me histone methyltransferase may be recruited to SAHF by UBN1 (Banumathy et al. 2009). One of the functions of the HIRA:ASF1A:UBN1:CABIN1 complex is to deposit histone H3.3. variant to chromatin, which influences gene expression (Zhang et al. 2007, Rai et al. 2011).
Further studies are needed to fully elucidate the mechanism of SAHF formation and mechanism by which SAHF promote cell senescence
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Interacting partner Detection method Interaction type PubMed IDs Interaction Score Source AEBP2 Reconstituted Complex physical 16431907 , (Europe PMC )NA BioGRID APEH Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID ARRB1 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 17620599 , (Europe PMC )0.35 BioGRID, IntAct ARRB2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 17620599 , (Europe PMC )0.35 BioGRID, IntAct ASB16 Affinity Capture-MS physical 24337577 , (Europe PMC )NA BioGRID ASB9 Affinity Capture-MS physical 24337577 , (Europe PMC )NA BioGRID ASXL1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID ATRX Affinity Capture-MS physical 23329831 , (Europe PMC )NA BioGRID BANF1 Affinity Capture-Western physical 16203725 , (Europe PMC )NA BioGRID BHLHA15 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID CAND1 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CD81 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID CDC73 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CENPA Co-purification physical 15009096 , (Europe PMC )NA BioGRID CEP250 Affinity Capture-MS physical 23443559 , (Europe PMC )NA BioGRID COPS5 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CSNK2A2 Two-hybrid, two hybrid physical, physical association 21988832 , (Europe PMC )0.37 BioGRID, IntAct CTNNB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID CTR9 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CUL1 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL2 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL3 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL4A Affinity Capture-MS, Affinity Capture-Western, Co-localization, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CUL4B Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL5 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CYLD Affinity Capture-MS physical 27591049 , (Europe PMC )NA BioGRID DAXX Affinity Capture-MS physical 25416818 , (Europe PMC )NA BioGRID DCAF1 Affinity Capture-MS, Affinity Capture-Western physical 24360965 , (Europe PMC )NA BioGRID DCAF4L2 Affinity Capture-MS physical 27158335 , (Europe PMC )NA BioGRID DDB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID DERL1 Affinity Capture-MS physical 28137758 , (Europe PMC )NA BioGRID DOT1L Affinity Capture-MS physical 20431927 , (Europe PMC )NA BioGRID EED Affinity Capture-MS, Reconstituted Complex physical 16431907 , 24457600 , (Europe PMC )NA BioGRID EIF2AK2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct FIP1L1 Co-fractionation physical 26344197 , (Europe PMC )NA BioGRID H1FX Co-fractionation physical 22939629 , (Europe PMC )NA BioGRID H2AFX Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID HDAC5 Affinity Capture-MS physical 21081666 , (Europe PMC )NA BioGRID HDGF Affinity Capture-MS, tandem affinity purification association, physical 21907836 , (Europe PMC )0.35 BioGRID, IntAct HIST1H2AD Co-fractionation physical 22939629 , (Europe PMC )NA BioGRID HIST1H3A Co-localization physical 23319141 , (Europe PMC )NA BioGRID HIST1H3E Affinity Capture-MS physical 26527279 , (Europe PMC )NA BioGRID HTR3A Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ICAM1 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID IGSF8 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID IL7R Protein-RNA physical 23151878 , (Europe PMC )NA BioGRID IRAK4 Biochemical Activity physical 15927069 , (Europe PMC )NA BioGRID ITGA4 Affinity Capture-MS physical 22623428 , (Europe PMC )NA BioGRID KEAP1 Affinity Capture-MS physical 27621311 , (Europe PMC )NA BioGRID KPNA7 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID KPNB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID LEO1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID LMNA Affinity Capture-MS physical 25948554 , (Europe PMC )NA BioGRID MCM2 Affinity Capture-MS physical 25963833 , (Europe PMC )NA BioGRID MCM5 Affinity Capture-MS physical 25963833 , (Europe PMC )NA BioGRID MRTO4 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID NCAPD3 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID NCL Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID NEDD8 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID NEPRO Affinity Capture-MS physical 26472760 , (Europe PMC )NA BioGRID NPM1 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 20431927 , 26496610 , (Europe PMC )0.35 BioGRID, IntAct NSD1 Biochemical Activity physical 24412544 , (Europe PMC )NA BioGRID NTRK1 Affinity Capture-MS physical 25921289 , (Europe PMC )NA BioGRID NXF2 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID OAS3 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct PAF1 Affinity Capture-MS, Affinity Capture-Western, Co-localization, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID PARP1 Affinity Capture-MS, Affinity Capture-Western, Biochemical Activity, Reconstituted Complex physical 18258596 , 28190768 , (Europe PMC )NA BioGRID PHF6 Affinity Capture-MS physical 22720776 , (Europe PMC )NA BioGRID POLR2A Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID PPAN Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID PRKCA Biochemical Activity physical 15927069 , (Europe PMC )NA BioGRID PRKDC Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID PRKN Affinity Capture-MS physical 24244333 , (Europe PMC )NA BioGRID PUF60 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID RBM39 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID RBX1 Affinity Capture-MS, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID RC3H1 Affinity Capture-MS physical 26170170 , (Europe PMC )NA BioGRID RNF146 Affinity Capture-MS, Affinity Capture-Western physical 21825151 , (Europe PMC )NA BioGRID RNF168 Reconstituted Complex physical 26503038 , (Europe PMC )NA BioGRID RNF2 Affinity Capture-MS physical 24457600 , (Europe PMC )NA BioGRID RPL28 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID RPL30 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID SEC24D Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID SFN Affinity Capture-MS physical 17361185 , (Europe PMC )NA BioGRID SMURF1 Affinity Capture-MS physical 23184937 , (Europe PMC )NA BioGRID SUZ12 Affinity Capture-MS, Reconstituted Complex physical 16431907 , 24457600 , (Europe PMC )NA BioGRID TBCD Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID TES Affinity Capture-MS physical 28378594 , (Europe PMC )NA BioGRID TONSL Affinity Capture-MS, tandem affinity purification association, physical 21113133 , (Europe PMC )0.35 BioGRID, IntAct, MINT TOP1 Affinity Capture-MS, anti bait coimmunoprecipitation, pull down association, physical 15848144 , (Europe PMC )0.46 BioGRID, IntAct TRIM25 Affinity Capture-MS, Affinity Capture-RNA physical 29117863 , (Europe PMC )NA BioGRID TRIM29 Affinity Capture-MS physical 26381412 , (Europe PMC )NA BioGRID UBASH3B Affinity Capture-MS physical 24189400 , (Europe PMC )NA BioGRID VHL Reconstituted Complex physical 22234250 , (Europe PMC )NA BioGRID WDR12 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID WDR5 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , 24360965 , (Europe PMC )NA BioGRID WDR61 Affinity Capture-MS physical 24360965 , (Europe PMC )NA BioGRID YBX1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, anti bait coimmunoprecipitation, anti tag coimmunoprecipitation association, physical 18258596 , 23986595 , 25497084 , (Europe PMC )0.53 BioGRID, IntAct YWHAQ Affinity Capture-MS physical 20618440 , (Europe PMC )NA BioGRID ZBTB48 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ZC3H3 Affinity Capture-MS physical 26186194 , 28514442 , (Europe PMC )NA BioGRID ZC3HAV1 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ZNF22 Affinity Capture-MS physical 26186194 , 28514442 , (Europe PMC )NA BioGRID ZNF746 Affinity Capture-MS physical 25315684 , (Europe PMC )NA BioGRID
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Interacting partner Detection method Interaction type PubMed IDs Interaction Score Source ARRB2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 17620599 , (Europe PMC )0.35 BioGRID, IntAct CBX6 tandem affinity purification association 21282530 , (Europe PMC )0.35 IntAct CSNK2A2 Two-hybrid, two hybrid physical, physical association 21988832 , (Europe PMC )0.37 BioGRID, IntAct EIF2AK2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct EIF4A3 anti tag coimmunoprecipitation association 23084401 , (Europe PMC )0.35 IntAct ESR2 affinity chromatography technology association 21182203 , (Europe PMC )0.35 IntAct F10 two hybrid pooling approach physical association 16169070 , (Europe PMC )0.37 IntAct GABARAP anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct GABARAPL1 anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct GABARAPL2 anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct HDGF Affinity Capture-MS, tandem affinity purification association, physical 21907836 , (Europe PMC )0.35 BioGRID, IntAct IFI16 anti tag coimmunoprecipitation association 25665578 , (Europe PMC )0.35 IntAct JUN anti bait coimmunoprecipitation association 25609649 , (Europe PMC )0.35 IntAct, MINT MAGOH anti tag coimmunoprecipitation association 23084401 , (Europe PMC )0.35 IntAct MAP1LC3B anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct MAPK13 anti tag coimmunoprecipitation association 19135240 , (Europe PMC )0.35 IntAct NFKB1 tandem affinity purification association 25609649 , (Europe PMC )0.35 IntAct, MINT NPM1 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 20431927 , 26496610 , (Europe PMC )0.35 BioGRID, IntAct OAS3 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct PLEKHA7 anti bait coimmunoprecipitation association 28877994 , (Europe PMC )0.35 IntAct PYHIN1 anti tag coimmunoprecipitation association 25665578 , (Europe PMC )0.35 IntAct RELA tandem affinity purification physical association 14743216 , (Europe PMC )0.40 IntAct RNF168 pull down physical association 26503038 , (Europe PMC )0.40 IntAct STK4 tandem affinity purification association 23386615 , (Europe PMC )0.35 IntAct TONSL Affinity Capture-MS, tandem affinity purification association, physical 21113133 , (Europe PMC )0.35 BioGRID, IntAct, MINT TOP1 Affinity Capture-MS, anti bait coimmunoprecipitation, pull down association, physical 15848144 , (Europe PMC )0.46 BioGRID, IntAct YBX1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, anti bait coimmunoprecipitation, anti tag coimmunoprecipitation association, physical 18258596 , 23986595 , 25497084 , (Europe PMC )0.53 BioGRID, IntAct YWHAZ tandem affinity purification association 20618440 , (Europe PMC )0.35 IntAct, MINT ZC3H18 anti tag coimmunoprecipitation association 29298432 , (Europe PMC )0.35 IntAct
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Interacting partner Detection method Interaction type PubMed IDs Interaction Score Source AEBP2 Reconstituted Complex physical 16431907 , (Europe PMC )NA BioGRID APEH Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID ARRB1 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 17620599 , (Europe PMC )0.35 BioGRID, IntAct ARRB2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 17620599 , (Europe PMC )0.35 BioGRID, IntAct ASB16 Affinity Capture-MS physical 24337577 , (Europe PMC )NA BioGRID ASB9 Affinity Capture-MS physical 24337577 , (Europe PMC )NA BioGRID ASXL1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID ATRX Affinity Capture-MS physical 23329831 , (Europe PMC )NA BioGRID BANF1 Affinity Capture-Western physical 16203725 , (Europe PMC )NA BioGRID BHLHA15 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID CAND1 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CBX6 tandem affinity purification association 21282530 , (Europe PMC )0.35 IntAct CD81 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID CDC73 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CENPA Co-purification physical 15009096 , (Europe PMC )NA BioGRID CEP250 Affinity Capture-MS physical 23443559 , (Europe PMC )NA BioGRID COPS5 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CSNK2A2 Two-hybrid, two hybrid physical, physical association 21988832 , (Europe PMC )0.37 BioGRID, IntAct CTNNB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID CTR9 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CUL1 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL2 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL3 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL4A Affinity Capture-MS, Affinity Capture-Western, Co-localization, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID CUL4B Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CUL5 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID CYLD Affinity Capture-MS physical 27591049 , (Europe PMC )NA BioGRID DAXX Affinity Capture-MS physical 25416818 , (Europe PMC )NA BioGRID DCAF1 Affinity Capture-MS, Affinity Capture-Western physical 24360965 , (Europe PMC )NA BioGRID DCAF4L2 Affinity Capture-MS physical 27158335 , (Europe PMC )NA BioGRID DDB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID DERL1 Affinity Capture-MS physical 28137758 , (Europe PMC )NA BioGRID DOT1L Affinity Capture-MS physical 20431927 , (Europe PMC )NA BioGRID EED Affinity Capture-MS, Reconstituted Complex physical 16431907 , 24457600 , (Europe PMC )NA BioGRID EIF2AK2 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct EIF4A3 anti tag coimmunoprecipitation association 23084401 , (Europe PMC )0.35 IntAct ESR2 affinity chromatography technology association 21182203 , (Europe PMC )0.35 IntAct F10 two hybrid pooling approach physical association 16169070 , (Europe PMC )0.37 IntAct FIP1L1 Co-fractionation physical 26344197 , (Europe PMC )NA BioGRID GABARAP anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct GABARAPL1 anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct GABARAPL2 anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct H1FX Co-fractionation physical 22939629 , (Europe PMC )NA BioGRID H2AFX Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID HDAC5 Affinity Capture-MS physical 21081666 , (Europe PMC )NA BioGRID HDGF Affinity Capture-MS, tandem affinity purification association, physical 21907836 , (Europe PMC )0.35 BioGRID, IntAct HIST1H2AD Co-fractionation physical 22939629 , (Europe PMC )NA BioGRID HIST1H3A Co-localization physical 23319141 , (Europe PMC )NA BioGRID HIST1H3E Affinity Capture-MS physical 26527279 , (Europe PMC )NA BioGRID HTR3A Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ICAM1 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID IFI16 anti tag coimmunoprecipitation association 25665578 , (Europe PMC )0.35 IntAct IGSF8 Affinity Capture-MS physical 23463506 , (Europe PMC )NA BioGRID IL7R Protein-RNA physical 23151878 , (Europe PMC )NA BioGRID IRAK4 Biochemical Activity physical 15927069 , (Europe PMC )NA BioGRID ITGA4 Affinity Capture-MS physical 22623428 , (Europe PMC )NA BioGRID JUN anti bait coimmunoprecipitation association 25609649 , (Europe PMC )0.35 IntAct, MINT KEAP1 Affinity Capture-MS physical 27621311 , (Europe PMC )NA BioGRID KPNA7 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID KPNB1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID LEO1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID LMNA Affinity Capture-MS physical 25948554 , (Europe PMC )NA BioGRID MAGOH anti tag coimmunoprecipitation association 23084401 , (Europe PMC )0.35 IntAct MAP1LC3B anti tag coimmunoprecipitation association 20562859 , (Europe PMC )0.35 IntAct MAPK13 anti tag coimmunoprecipitation association 19135240 , (Europe PMC )0.35 IntAct MCM2 Affinity Capture-MS physical 25963833 , (Europe PMC )NA BioGRID MCM5 Affinity Capture-MS physical 25963833 , (Europe PMC )NA BioGRID MRTO4 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID NCAPD3 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID NCL Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID NEDD8 Affinity Capture-MS physical 21145461 , (Europe PMC )NA BioGRID NEPRO Affinity Capture-MS physical 26472760 , (Europe PMC )NA BioGRID NFKB1 tandem affinity purification association 25609649 , (Europe PMC )0.35 IntAct, MINT NPM1 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 20431927 , 26496610 , (Europe PMC )0.35 BioGRID, IntAct NSD1 Biochemical Activity physical 24412544 , (Europe PMC )NA BioGRID NTRK1 Affinity Capture-MS physical 25921289 , (Europe PMC )NA BioGRID NXF2 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID OAS3 Affinity Capture-MS, anti tag coimmunoprecipitation association, physical 21903422 , (Europe PMC )0.35 BioGRID, IntAct PAF1 Affinity Capture-MS, Affinity Capture-Western, Co-localization, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID PARP1 Affinity Capture-MS, Affinity Capture-Western, Biochemical Activity, Reconstituted Complex physical 18258596 , 28190768 , (Europe PMC )NA BioGRID PHF6 Affinity Capture-MS physical 22720776 , (Europe PMC )NA BioGRID PLEKHA7 anti bait coimmunoprecipitation association 28877994 , (Europe PMC )0.35 IntAct POLR2A Affinity Capture-Western, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID PPAN Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID PRKCA Biochemical Activity physical 15927069 , (Europe PMC )NA BioGRID PRKDC Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID PRKN Affinity Capture-MS physical 24244333 , (Europe PMC )NA BioGRID PUF60 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID PYHIN1 anti tag coimmunoprecipitation association 25665578 , (Europe PMC )0.35 IntAct RBM39 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID RBX1 Affinity Capture-MS, Reconstituted Complex physical 24360965 , (Europe PMC )NA BioGRID RC3H1 Affinity Capture-MS physical 26170170 , (Europe PMC )NA BioGRID RELA tandem affinity purification physical association 14743216 , (Europe PMC )0.40 IntAct RNF146 Affinity Capture-MS, Affinity Capture-Western physical 21825151 , (Europe PMC )NA BioGRID RNF168 Reconstituted Complex physical 26503038 , (Europe PMC )NA BioGRID RNF168 pull down physical association 26503038 , (Europe PMC )0.40 IntAct RNF2 Affinity Capture-MS physical 24457600 , (Europe PMC )NA BioGRID RPL28 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID RPL30 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID SEC24D Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID SFN Affinity Capture-MS physical 17361185 , (Europe PMC )NA BioGRID SMURF1 Affinity Capture-MS physical 23184937 , (Europe PMC )NA BioGRID STK4 tandem affinity purification association 23386615 , (Europe PMC )0.35 IntAct SUZ12 Affinity Capture-MS, Reconstituted Complex physical 16431907 , 24457600 , (Europe PMC )NA BioGRID TBCD Co-fractionation physical 22863883 , (Europe PMC )NA BioGRID TES Affinity Capture-MS physical 28378594 , (Europe PMC )NA BioGRID TONSL Affinity Capture-MS, tandem affinity purification association, physical 21113133 , (Europe PMC )0.35 BioGRID, IntAct, MINT TOP1 Affinity Capture-MS, anti bait coimmunoprecipitation, pull down association, physical 15848144 , (Europe PMC )0.46 BioGRID, IntAct TRIM25 Affinity Capture-MS, Affinity Capture-RNA physical 29117863 , (Europe PMC )NA BioGRID TRIM29 Affinity Capture-MS physical 26381412 , (Europe PMC )NA BioGRID UBASH3B Affinity Capture-MS physical 24189400 , (Europe PMC )NA BioGRID VHL Reconstituted Complex physical 22234250 , (Europe PMC )NA BioGRID WDR12 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , (Europe PMC )NA BioGRID WDR5 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex physical 18258596 , 24360965 , (Europe PMC )NA BioGRID WDR61 Affinity Capture-MS physical 24360965 , (Europe PMC )NA BioGRID YBX1 Affinity Capture-MS, Affinity Capture-Western, Reconstituted Complex, anti bait coimmunoprecipitation, anti tag coimmunoprecipitation association, physical 18258596 , 23986595 , 25497084 , (Europe PMC )0.53 BioGRID, IntAct YWHAQ Affinity Capture-MS physical 20618440 , (Europe PMC )NA BioGRID YWHAZ tandem affinity purification association 20618440 , (Europe PMC )0.35 IntAct, MINT ZBTB48 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ZC3H18 anti tag coimmunoprecipitation association 29298432 , (Europe PMC )0.35 IntAct ZC3H3 Affinity Capture-MS physical 26186194 , 28514442 , (Europe PMC )NA BioGRID ZC3HAV1 Affinity Capture-MS physical 28514442 , (Europe PMC )NA BioGRID ZNF22 Affinity Capture-MS physical 26186194 , 28514442 , (Europe PMC )NA BioGRID ZNF746 Affinity Capture-MS physical 25315684 , (Europe PMC )NA BioGRID
Phosphorylating Kinases Phosphoresidues Detection Method PubMed IDs Source
Visualize a network of protein kinases and phosphatases phosphorylating and dephosphorylating this protein respectively
CHEK2 S36_GGTPRKAsGPPVSEL , S55_VAASKERsGVSLAAL , S89_LGLKSLVsKGTLVQT , T167_KPAAATVtKKVAKSP , T92_KSLVSKGtLVQTKGT , NA NA PhosphoSitePlus , PRKDC T146_KKAAGGAtPKKSAKK , NA NA PhosphoSitePlus , Unknown S104_KGTGASGsFKLNKKA , S173_VTKKVAKsPKKAKVA , S2_AAPKKKsETAPAAP , S2_MsETAPAAP , S36_GGTPRKAsGPPVSEL , S41_KASGPPVsELITKAV , T146_KKAAGGAtPKKSAKK , T165_AKKPAAAtVTKKVAK , T31_AAKKAGGtPRKASGP , T4_MSEtAPAAPAA , HTP, LTP, in vivo 15595731 , 16377619 , 17043054 , 17081983 , 17287340 , 17924679 , 18212344 , 18669648 , 19007248 , 19413330 , 19651622 , 19691289 , 20058876 , 20068231 ,(Europe PMC )HPRD, PhosphoELM ,